Index

B

basic_2Dhist() (in module BasicPlotter), [1] basic_bars() (in module BasicPlotter), [1] basic_hist() (in module BasicPlotter), [1] basic_pie() (in module BasicPlotter), [1]

basic_venn() (in module BasicPlotter), [1] basic_violin() (in module BasicPlotter), [1] bed_to_feature_dict() (in module GTF_Processing), [1] bed_to_length_dict() (in module GTF_Processing), [1] bigwig_counts() (in module BigWig_Counter), [1]

C

clustermap() (in module Heatmaps), [1]

cumulative_plot() (in module BasicPlotter), [1]

F

fn_patternmatch() (in module Various), [1]

G

gene_biotypes() (in module GTF_Processing), [1] gene_body_bed() (in module GTF_Processing), [1] gene_feature_bed() (in module GTF_Processing), [1] gene_feature_table() (in module GTF_Processing), [1]

gene_introns_bed() (in module GTF_Processing), [1] gene_location_bpwise() (in module Bed_Analysis), [1] gene_window_bed() (in module GTF_Processing), [1] genome_lifter() (in module GenomeLifter), [1] go_enrichment() (in module GOEnrichment), [1]

H

heatmap_cols() (in module Heatmaps), [1]

I

intersection_heatmap() (in module Bed_Analysis), [1]

M

match_gene_identifiers() (in module GTF_Processing), [1] meme_id_map() (in module MEME_Formatting), [1]

meme_monomer_map() (in module MEME_Formatting), [1] multi_mod_plot() (in module BasicPlotter), [1] myfunction1() (in module DocuExamples)

O

overlap_heatmap() (in module BasicPlotter), [1]

P

peaks_fetch_col() (in module Bed_Analysis), [1] peaks_genebody_overlap() (in module Bed_Analysis), [1] peaks_peaks_overlap() (in module Bed_Analysis), [1]

peaks_promoter_overlap() (in module Bed_Analysis), [1] plotHeatmap() (in module CoveragePlots), [1] possible_interactions() (in module Bed_Analysis), [1] promoter_fetch_col() (in module Bed_Analysis), [1]

S

stacked_bars() (in module BasicPlotter), [1]

subset_meme() (in module MEME_Formatting), [1]

U

uniprot_domains() (in module UniProt_API), [1]

upset_plotter() (in module BasicPlotter), [1] upset_to_reference() (in module Bed_Analysis), [1]