FuFis (Frequently used Functions)

• FuFis (Frequently used Functions)
  • Installation and Introduction
    • Frequently used Flags
• BasicPlotter
  • basic_bars()
  • stacked_bars()
  • basic_pie()
  • basic_hist()
  • basic_violin()
  • basic_2Dhist()
  • multi_mod_plot()
  • basic_venn()
  • overlap_heatmap()
  • upset_plotter()
  • cumulative_plot()
• Bed Analysis
  • gene_location_bpwise()
  • intersection_heatmap()
  • upset_to_reference()
  • peaks_peaks_overlap()
  • peaks_promoter_overlap()
  • peaks_fetch_col()
  • promoter_fetch_col()
  • peaks_genebody_overlap()
  • possible_interactions()
• BigWig Counter
  • bigwig_counts()
• Coverage Plots
  • plotHeatmap()
• FIMO TFBSs
  • TFBS in regions
    • Named Arguments
  • TFBS in promoter
    • Named Arguments
• GenomeLifter
  • genome_lifter()
• GTF processing
  • gene_window_bed()
  • gene_feature_table()
  • match_gene_identifiers()
  • gene_body_bed()
  • gene_feature_bed()
  • gene_introns_bed()
  • gene_biotypes()
  • bed_to_length_dict()
  • bed_to_feature_dict()
• GO enrichment
  • go_enrichment()
• MEME formatting
  • meme_id_map()
  • meme_monomer_map()
  • subset_meme()
• Heatmaps
  • heatmap_cols()
  • clustermap()
• UniProt API
  • uniprot_domains()
• Various
  • fn_patternmatch()
• Documentation for the documentation
  • General setup
  • Folder structure
  • The autodoc function
    • myfunction1()
  • Specifics of this documentation
  • Steps for adding a documentation page
  • A few words on automock