============
MEME formatting
============

Functions for parsing TF motif files in meme-format (https://meme-suite.org/meme/doc/meme-format.html). Note, even if
it's a defined format, there might be variations when using files that are not used in the examples here.

.. code-block:: python

    *MEME_Formatting.base_code*

.. .--------------------------------------------------------------------------------------------------------------------
.. meme_id_map
.. .--------------------------------------------------------------------------------------------------------------------
.. autofunction:: MEME_Formatting.meme_id_map

.. code-block:: python

    *MEME_Formatting.meme_id_map*

.. include:: gallery/src.MEME_Formatting.meme_id_map.txt
    :literal:


.. .--------------------------------------------------------------------------------------------------------------------
.. meme_monomer_map
.. .--------------------------------------------------------------------------------------------------------------------
.. autofunction:: MEME_Formatting.meme_monomer_map

.. code-block:: python

    *MEME_Formatting.meme_monomer_map*

.. include:: gallery/src.MEME_Formatting.meme_monomer_map.txt
    :literal:


.. .--------------------------------------------------------------------------------------------------------------------
.. meme_id_map
.. .--------------------------------------------------------------------------------------------------------------------
.. autofunction:: MEME_Formatting.subset_meme

.. code-block:: python

    *MEME_Formatting.subset_meme*

.. include:: gallery/Subset_meme.txt
    :literal: